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    1.Nauty
     A program for computing automorphism groups of graphs and digraphs. It can also produce a canonical labelling.
    cs.anu.edu.au
    2.Free Software in Graph Theory
     Free Software for Win 9X,NT on Graph Theory by Vitali Petchenkine. Procedures: Metrics of the graph; Paths and cycles; Colorations; Automorphism group; Minimal spanning tree; Shortest paths; Max. Capacity path; K Shortest paths; Salesman problem; Maximal flow; Critical path; Reports for Graphs; Print.
    www.geocities.com
    3.Scalable Libraries for Graph Partitioning
     We are pursuing research in the area of new parallel methods for graph partitioning and incremental graph partitioning. Efficient methods for graph partitioning and incremental graph partitioning are important for parallelization of a large number of unstructured and/or adaptive applications.
    www.npac.syr.edu
    4.plantri and fullgen
     Programs for generation of certain types of planar graph, generated in such a way that exactly one member of each isomorphism class is output without the need for storing them.
    cs.anu.edu.au
    5.Algorithms and Software for Partitioning Meshes
     Using combinatorics to solve structured linear systems of equations.
    www.cs.sandia.gov
    6.SF, Posets and Coxeter/Weyl
     John Stembridge's Maple packages for symmetric functions, posets, root systems, and finite Coxeter groups.
    www.math.lsa.umich.edu
    7.Graph Partitioners
     Three algorithms written in NESL for finding separators of graphs, in order to compare the quality of the cuts.
    www.cs.cmu.edu
    8.Combinatorics Software of the Algorithms Project
     Combinatorial analysis, discrete mathematics and computer algebra are the main interests of the Algorithms Projects. The packages let you define combinatorial structures; manipulate the associated generating functions, functional equations or recurrences; study their asymptotic behaviour.
    algo.inria.fr
    9.GraphThing
     Tool for investigating Graph Theory, with a GTK interface. Free under GPL. Unix, source code in C++.
    graph.seul.org
    10.ACE
     An Algebraic Combinatorics Environment for MAPLE providing functions to work with classical structures in algebraic combinatorics. Free download.
    phalanstere.univ-mlv.fr
    11.LINK: A Software System for Discrete Mathematics
     A general-purpose, extendible computing environment in which discrete mathematical objects representing real world problems can be easily manipulated and visualized.
    dimacs.rutgers.edu
    12.Project Vega
     A system for manipulating discrete mathematical structures: a Mathematica based collection of operations with interface to external packages and programs.
    vega.ijp.si
    13.JGraphT
     Free Java class library that provides mathematical graph-theory objects and algorithms.
    jgrapht.sourceforge.net
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